rs47669469 SNP Detail

Summary

• ID
  rs47669469
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:149208403 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTCCTTAAC CCCTTTACCC AATTATGTAA CACCAAGACT
  TCAAAGCCCC AGCTTTTTGA TTTTCATAGC TGGACCTTGG TGGTCAGCCT CAGGATAAGT
  S
  AGACACAAGA AAGTCAATAA GGAAGTCTAT CGGGGGAGTC TACTGATTTA GCAAAAAGAG
  AAATGGAAAG GGGCATGACT CATGCTATGT TTGGGCCTGT                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ
ss60961301	NES16169972	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ
rs47669469					SNP	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60961301	NES16169972	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:149208403 () rs orientation: forward

Symbol	Name	Function Class
Gm56997	predicted gene, 56997	1940 bp downstream
Rr380294	regulatory region 380294	315 bp upstream
Rr641718	regulatory region 641718	854 bp proximal
Tssr64177	transcription start site region 64177	1432 bp upstream
Tssr64178	transcription start site region 64178	877 bp downstream