rs47669604 SNP Detail

Summary

• ID
  rs47669604
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:9303405 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A AGTTATTGTC TATGCACATA AGATCTATTT GTATAGGTAT
  TTAAGCCAAA GAAGAAATGG ATTCTAAGCA GGATATGTAT TATCATGTAT ACATTTCTTA
  R
  AATTCAGTTC AAAGTTTGGC TGGAGCAGAT CATTTCTGTC AGTAAATAAA TGTGTTCTTC
  TTTTTCAGCT TACAGACTGG AACTAGAAGT GTTAGCCACC A                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134086352	ENSMUSSNP3981956	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47669604					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:9303405 () rs orientation: forward

Symbol	Name	Function Class
Cybb	cytochrome b-245, beta polypeptide	mRNA-UTR
Tssr160517	transcription start site region 160517	1667 bp downstream
Tssr160518	transcription start site region 160518	1165 bp downstream
Tssr160519	transcription start site region 160519	521 bp downstream
Tssr160520	transcription start site region 160520	457 bp downstream
Tssr160521	transcription start site region 160521	403 bp downstream
Tssr160522	transcription start site region 160522	286 bp downstream
Tssr162873	transcription start site region 162873	1518 bp upstream
Tssr162874	transcription start site region 162874	1262 bp upstream
Tssr162875	transcription start site region 162875	1239 bp upstream
Tssr162876	transcription start site region 162876	1083 bp upstream
Tssr162877	transcription start site region 162877	1064 bp upstream
Tssr162878	transcription start site region 162878	1012 bp upstream
Tssr162879	transcription start site region 162879	906 bp upstream
Tssr162880	transcription start site region 162880	820 bp upstream
Tssr162881	transcription start site region 162881	802 bp upstream
Tssr162882	transcription start site region 162882	502 bp upstream
Tssr162883	transcription start site region 162883	112 bp upstream
Tssr162884	transcription start site region 162884	47 bp upstream
Tssr162885	transcription start site region 162885	11 bp upstream
Tssr162886	transcription start site region 162886	8 bp downstream
Tssr162887	transcription start site region 162887	35 bp downstream
Tssr162888	transcription start site region 162888	88 bp downstream
Tssr162889	transcription start site region 162889	118 bp downstream
Tssr162890	transcription start site region 162890	178 bp downstream
Tssr162891	transcription start site region 162891	212 bp downstream
Tssr162892	transcription start site region 162892	265 bp downstream
Tssr162893	transcription start site region 162893	369 bp downstream
Tssr162894	transcription start site region 162894	399 bp downstream
Tssr162895	transcription start site region 162895	459 bp downstream
Tssr162896	transcription start site region 162896	485 bp downstream
Tssr162897	transcription start site region 162897	512 bp downstream
Tssr162898	transcription start site region 162898	536 bp downstream
Tssr162899	transcription start site region 162899	682 bp downstream
Tssr162900	transcription start site region 162900	692 bp downstream
Tssr162901	transcription start site region 162901	723 bp downstream
Tssr162902	transcription start site region 162902	805 bp downstream
Tssr162903	transcription start site region 162903	866 bp downstream
Tssr162904	transcription start site region 162904	967 bp downstream
Tssr162905	transcription start site region 162905	1051 bp downstream
Tssr162906	transcription start site region 162906	1055 bp downstream
Tssr162907	transcription start site region 162907	1128 bp downstream
Tssr162908	transcription start site region 162908	1152 bp downstream