rs47669730 SNP Detail

Summary

• ID
  rs47669730
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:94797557 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTC TCAGGTTCAT TTCGCCCTTC
  Y
  GCTCACTTTT CCTCCTTCGC ATCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60512645	NES16528917	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47669730					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60512645	NES16528917	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:94797557 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8509	CpG island 8509	415 bp proximal
Gm31407	predicted gene, 31407	1530 bp upstream
Kcnj6	potassium inwardly-rectifying channel, subfamily J, member 6	within coordinates
Rr520239	regulatory region 520239	637 bp distal
Rr520240	regulatory region 520240	875 bp distal
Rr520241	regulatory region 520241	20 bp proximal
Rr520242	regulatory region 520242	947 bp proximal
Tssr142241	transcription start site region 142241	1733 bp upstream
Tssr142242	transcription start site region 142242	1632 bp upstream
Tssr142243	transcription start site region 142243	1558 bp upstream
Tssr142244	transcription start site region 142244	1545 bp upstream
Tssr142245	transcription start site region 142245	676 bp downstream
Tssr142246	transcription start site region 142246	772 bp downstream
Tssr142247	transcription start site region 142247	878 bp downstream
Tssr142248	transcription start site region 142248	909 bp downstream
Tssr142249	transcription start site region 142249	955 bp downstream
Tssr142250	transcription start site region 142250	1008 bp downstream
Tssr142251	transcription start site region 142251	1040 bp downstream