rs47670114 SNP Detail

Summary

• ID
  rs47670114
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:95161270 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G TTGGGGTACT GGTGGCTTAG CAAAATGCAG TCGGACACTG
  TAATTTGGGG ACCACAGAAA TTGGAGGGAG TGGCTCAGTT TGGGAAAAAA CTTTGTATGT
  C
  TGTGCGCCCC CTCTCCTGGT GCCTGCCACA CTTGTCATCC CCCACCCCCA ACCATACTTT
  CTTCTTGTTT TTTTTTTTTT CTTTTCAATG CCTTTGCTTT A                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145631293	ENSMUSSNP4887607	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47670114					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:95161270 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9330175E14Rik	RIKEN cDNA 9330175E14 gene			within coordinates
Nlrc5	NLR family, CARD domain containing 5			Intron
				Noncoding-Transcript-Variant
Rr401062	regulatory region 401062			160 bp downstream
Rr667981	regulatory region 667981			456 bp distal
Rr667982	regulatory region 667982			241 bp distal
Rr667983	regulatory region 667983			within coordinates
Tssr78863	transcription start site region 78863			288 bp downstream
Tssr78864	transcription start site region 78864			239 bp downstream
Tssr78865	transcription start site region 78865			81 bp upstream
Tssr82495	transcription start site region 82495			472 bp upstream
Tssr82496	transcription start site region 82496			345 bp upstream