rs47670227 SNP Detail

Summary

• ID
  rs47670227
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:47742938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C CTTCATGGAA ACGTGTATTC AGCAGTCGGA GGGCCCTAAA
  GGGTTAAGAT TCAGGAAGCT CTGGCAAGAC ATCCAGGAGG CAGAAAGGCA ATGAGATCTA
  G
  AAGGGAGGCC ATCATCCATC TCCAGTATGT GGCTTGGTAA TACATAGCCA GAACAACCTC
  TCTGTGGATA CCAAGGGGGT GGGGATAAAA AGCCACAAGT C                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss144801555	ENSMUSSNP6755774	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs47670227					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:47742938 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20326	CpG island 20326	76 bp distal
Rr663192	regulatory region 663192	1533 bp distal
Rr663193	regulatory region 663193	11 bp distal
Stox2	storkhead box 2	within coordinates
Tssr2563	transcription start site region 2563	255 bp upstream
Tssr77334	transcription start site region 77334	1484 bp downstream
Tssr81223	transcription start site region 81223	1743 bp upstream
Tssr81224	transcription start site region 81224	1608 bp upstream
Tssr81225	transcription start site region 81225	1427 bp upstream
Tssr81226	transcription start site region 81226	554 bp upstream
Tssr81227	transcription start site region 81227	519 bp upstream
Tssr81228	transcription start site region 81228	492 bp upstream
Tssr81229	transcription start site region 81229	442 bp upstream