rs47671649 SNP Detail

Summary

• ID
  rs47671649
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:92090122 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTCCAGCCT GCCCACACCT TTCGTTTGGC AAGATTGTTG
  TCTGGAGGGT ACAGGGTGGC TGTGGACAGT GTCACGCAGA GCGCCCTCTA CTGTAATGTC
  R
  GAGTGTCTTA AGTGTAGTGC CCTCCACTGG GAAGTGAGGC TTTGTGTGCA TAGCTGTGCT
  TCCTACAAAG TCCGAATCTT GTTGTGTGAA GCTGTATGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145570236	ENSMUSSNP5888599	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss322791509	CHEV_8_93887393	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47671649					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:92090122 () rs orientation: forward

Symbol	Name	Function Class
Fto	FTO alpha-ketoglutarate dependent dioxygenase	within coordinates
Rr178622	regulatory region 178622	within coordinates
Rr191071	regulatory region 191071	1523 bp distal
Rr191072	regulatory region 191072	within coordinates
Tssr78731	transcription start site region 78731	228 bp downstream