rs47671831 SNP Detail

Summary

• ID
  rs47671831
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:74859470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTAA TAGCTGCAAC CCTTGTTGCT
  K
  TTTTTAGCTA CAGCAATTCT TGACA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136638889	ENSMUSSNP4150956	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
ss323007473	CHEV_9_74799995	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47671831					SNP	T	G	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:74859470 () rs orientation: forward

Symbol	Name	Function Class
Atosa	atos homolog A	692 bp upstream
Cpgi22037	CpG island 22037	296 bp proximal
D9Mit1008	DNA segment, Chr 9, Massachusetts Institute of Technology 1008	1216 bp distal
Gm68252	predicted gene, 68252	within coordinates
Rr401515	regulatory region 401515	51 bp downstream
Rr401516	regulatory region 401516	541 bp upstream
Rr683033	regulatory region 683033	366 bp distal
Rr683034	regulatory region 683034	452 bp distal
Rr683035	regulatory region 683035	within coordinates
Rr683036	regulatory region 683036	619 bp proximal
Rr683037	regulatory region 683037	910 bp proximal
Tssr86114	transcription start site region 86114	664 bp upstream
Tssr86115	transcription start site region 86115	886 bp upstream
Tssr86116	transcription start site region 86116	968 bp upstream
Tssr86117	transcription start site region 86117	1373 bp upstream