rs47672760 SNP Detail

Summary

• ID
  rs47672760
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121618366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGATGTGAG ACAGATACCG AAAGATTCCA AGGAAACTAC
  GGCCAAGAAC GAGTGTGGTG GTGACGCTGA CCTGGCAACT CAACACAACC TCAATTAGCC
  R
  GGGCGGGGGG GGGGGGGGGC AGTCATAACA GAGAACTAAC TGTCTGTCGC CTATCTTGGC
  TGGACCTATG GGCGTGTCGT GGGGGCTGTG CTGAGTGTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320485402	CHEV_2_121613621	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs47672760					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121618366 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Frmd5	FERM domain containing 5			Intron
				Noncoding-Transcript-Variant
Rr563873	regulatory region 563873			231 bp distal
Rr563874	regulatory region 563874			within coordinates