rs47672823 SNP Detail

Summary

• ID
  rs47672823
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:3492626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGTC ATCTCTCAAT CCAGAGAAGC
  Y
  CTGACCCCAT CAGGGGAAGG ATTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146002439	ENSMUSSNP2462540	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss325715146	CHEV_19_3442626	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47672823					SNP	C	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:3492626 () rs orientation: forward

Symbol	Name	Function Class
Rr364729	regulatory region 364729	827 bp distal
Rr542416	regulatory region 542416	1130 bp distal
Tssr157389	transcription start site region 157389	1719 bp upstream
Tssr157390	transcription start site region 157390	1350 bp upstream
Tssr157391	transcription start site region 157391	1322 bp upstream