rs47672845 SNP Detail

Summary

• ID
  rs47672845
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:4558213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATTTTATA TAACTATGTA
  AAATATCCAT CCCTGCTTGA GAATTTTTAA ATTTTCATGT TTATCAAAAA TTAAGAAGCA
  TGCATGAATT TAGCTACTTA AAGAAATACT CCTGGCTGTT CTTATGGGGT AAACTCTAGG
  TGTTCTTCAA GGACGTGGAA ATGGCTCAAG GTCATTTCCT GCTTCTGATT TCCACTCTAA
  R
  GAAGCATTTT GCATCTGGTA AAATTTGCTT CTCGTTTAAG TCAGCTTGTG GTTCTCTGGA
  GAGCAGAGCC TTCCTCCCTT TACAGTAAGC CTGTCTTTCT TGTCCCTTCT TCTGGCTACT
  TAGATTACTC TCAGTCAACT TCAATTTCTG GTACTTACAA TTTTCTCTGA GGTAATTTTT
  TTTTTTTTTT TTTTTTTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss61339530	NES16950050	PERLEGEN	MM_PANEL2	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs47672845					SNP	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61339530	NES16950050	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:4558213 () rs orientation: forward

Symbol	Name	Function Class
2900045O20Rik	RIKEN cDNA 2900045O20 gene	within coordinates
Rr265385	regulatory region 265385	1387 bp proximal
Rr267453	regulatory region 267453	214 bp distal
Tssr112556	transcription start site region 112556	973 bp downstream