rs47672847 SNP Detail

Summary

• ID
  rs47672847
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:145656732 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCTTCAC CCGCCCCTTG
  CCTTATCTTT GAAACATTTT CTTATGAATG AAATTCTCCC AGTTACTGAA GTCGCGATAA
  AAGCCCCTCC TTAATTGCCC CGACCGGAAT GGAAACAGCA GTGTGTTTGT AATGGCTTCC
  CTGCCATTAC AGTGTTATCA TGTTGGTTTA CAGGACAGCA GTGTATACTT AAAAATCACA
  G
  TTATTACAAT ATAAAAGTAG GTGAAATAGG TTTAAATTTG CTCTTTTATT AATACAGGGA
  CTCAATGTGT AGCTCATCAC GGCCTCAAAC TTCCTTTGTA GCACAGGTTG ACCTCAAACT
  AGGAATTCTC CTGCCTCAGC CTCTCAATGC TTAGTAAGCA TCCTAGCTCA GTGCTGGGAT
  TACAGCCACT GCATGTGGCT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321009191	CHEV_3_145613941	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs47672847					SNP	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss136040876	ENSMUSSNP479384	ENSEMBL	ENSEMBL_Sanger	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145656732 () rs orientation: forward

Symbol	Name	Function Class
Rr586881	regulatory region 586881	23 bp distal
Rr586882	regulatory region 586882	303 bp proximal
Rr586883	regulatory region 586883	1685 bp proximal