rs47675240 SNP Detail

Summary

• ID
  rs47675240
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:65844069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGGAGCA TTGCCATGTG
  TCGCCAGGGG CCACTGGAGC ATTGCCATCC GTCACCAGGG GAATCCAACC TTGGCAAGTG
  TCAGTGCTCA AACTGCGCTG ACACCCGGTG GTAAAAGAGC TTCAGGGTCA GGCTGTCTCC
  CCCACTCTGG GCTCTCACAC TAGTTTGAAC AGGATTTCGG GCCTGGTCTC AAGGAACAGC
  W
  TCTGGGGTCC TACACGATCC GAGGGGGCCT GGCACTAAAT GTCATGTGAT GTGTTCTTCG
  GTGTGAAAAG GCTTCTGGCT GTGCGCTTGA CTTTAATCTT CCGTTTGGGA CACTTGATTC
  GATTGCCTTA ACAAAGGAGG TTTTTCCCCA GGAGTAAGAC GGCTGTCAGG CTTTTCAAGA
  AAGTTCTTGT GGCAGCAGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60417508	NES15922112	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47675240					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60417508	NES15922112	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65844069 () rs orientation: forward

Symbol	Name	Function Class
Rr68053	regulatory region 68053	1332 bp proximal
Rr76051	regulatory region 76051	1164 bp distal
Rr76052	regulatory region 76052	10 bp distal
Rr81263	regulatory region 81263	1594 bp proximal