rs47677742 SNP Detail

Summary

• ID
  rs47677742
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185866954 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGTTCAGTG ACAGATCTTG TCTCAAAAAC ATAAAGTAAA
  GAAATAATTG GCCCTGGCAT TCCCCTGTAC TGAGGCATAT AAAGTTTGCA ATACCAAGGG
  R
  CCTCTCTTCC CAGTGACGGC TGACTAGGCC ATCTTCTGCT ACATATGCAG CTAGAGACAT
  GAGCTCTGCT GGTACTGGTT AGTTCATATT GTTGTTCCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146452353	ENSMUSSNP4305678	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss320182218	CHEV_1_187958636	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47677742					SNP	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185866954 () rs orientation: forward

Symbol	Name	Function Class
Rr425453	regulatory region 425453	1996 bp proximal