rs47678330 SNP Detail

Summary

• ID
  rs47678330
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127482555 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAAACAGT AGTTTTCAAC
  TTTTCCAATG CTGTGACTCT AATAAGTTCC TTATCACTTA AATCTATGTT GTGGGACTCT
  GCTCCCATTG CCAACTCTAA AATCAGGCCA GGAATTGCAT ATATCAGATG CCATGCAAAA
  TGTAACATAG GTGTGCCATT TATGGCTCTC TACATAAAAT GTCAATGAAG ATGAAATCTT
  Y
  AGCCTCCAAT AAAATTGTTT TTATATAGTA ATAATAATTA CAGTTCTTCA TGTTGTGGTG
  ACCCCAACAA TAAAACCATG TTCCATAACT GATTTTGCTA GTTATGAATG TTGTGTAATG
  TCAATATCTG TATTTTCTGA TGGTCTTAGG TGACCCACAG GCTGAGAACC ACTGGGTTAA
  AAGCATTTGT TGCTCTCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135868991	ENSMUSSNP2314087	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320956095	CHEV_3_127391824	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47678330					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127482555 () rs orientation: forward

Symbol	Name	Function Class
Alpk1	alpha-kinase 1	within coordinates
Tssr35586	transcription start site region 35586	354 bp upstream
Tssr35587	transcription start site region 35587	1842 bp downstream