rs47678782 SNP Detail

Summary

• ID
  rs47678782
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121137812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAGTACTCA TTCTAAAAGA ACAATAAAAC TCCTTTAAAG
  TCTATGTCCA GTGTGGAGAA TTCTGTGCCC TGAAGCATCT ATATTTTGGG TTTTGACTGA
  Y
  AGCTCGCTAA GTGTGAGTGG AGAGTCACAT CCTCTGGTTG TGGTGGTGAA AGACAGCAGG
  CTCTGTCCAG CCCGGGTACT GAGCTGGCTT CAGTAACTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss135718904	ENSMUSSNP6284767	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs47678782					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121137812 () rs orientation: forward

Symbol	Name	Function Class
Alg14	asparagine-linked glycosylation 14	within coordinates
Gm33310	predicted gene, 33310	790 bp upstream
Gm66111	predicted gene, 66111	801 bp upstream
Rr367544	regulatory region 367544	857 bp upstream
Tssr35413	transcription start site region 35413	826 bp upstream
Tssr35414	transcription start site region 35414	792 bp upstream