rs47679406 SNP Detail

Summary

• ID
  rs47679406
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55251830 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAACCCTCT GTCCCATTTT
  ATGTAGTTCC CAAATAGGTA GAAACTAGAA TGTTTCACCC AGAATTCAAG ATAGAAAAAG
  GATTACTCTT TTTTGCTTAA AAAAAAAAAA CAAAAAACAA AAAACAAAAA AACAATCACT
  TTTATGTATG CCTATGTCTG TATATAGGGA AGTCAGAAGG AACTAAAATT CCCCTGGGGC
  C
  GGAGTTAAAG GTAGTTGTGA GCTGTCTTGT CTGGGTGCTG GGAATGGAAC GTTGGTCATC
  TGCAAGAATA ATATGTGCTC TTGGCCACTG ACTGAGCCAT CGCTCCAGCC CCGTTTTCAT
  TTTGTTTATT GAGATGGGAT CTCACAATGT AGACCAGACT GGCTTGAAAC TCATGGAGCT
  CTGCTTGTCT CTTGACTAAA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss139575799	ENSMUSSNP3097391	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss324641561	CHEV_14_55633210	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs47679406					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55251830 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6482	CpG island 6482	261 bp proximal
Gm63342	predicted gene, 63342	1159 bp downstream
Gm63347	predicted gene, 63347	within coordinates
Ngdn	neuroguidin, EIF4E binding protein	1081 bp upstream
Rr369830	regulatory region 369830	712 bp upstream
Rr369831	regulatory region 369831	931 bp upstream
Rr404108	regulatory region 404108	within coordinates
Rr492392	regulatory region 492392	591 bp proximal
Rr492393	regulatory region 492393	773 bp proximal
Rr492394	regulatory region 492394	1092 bp proximal
Rr492395	regulatory region 492395	1418 bp proximal
Rr492396	regulatory region 492396	1785 bp proximal
Tssr125743	transcription start site region 125743	1157 bp upstream