rs47679858 SNP Detail

Summary

• ID
  rs47679858
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:78182831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGAAACTC GGGAGTTCGG
  AGCCAACAAG GAGGGAGTAG AGGCTGAAAG GCTCACCTAA AAAGAGGCAT TCTCTGTCTC
  AAACTATTGA TAAAGCAAAT GTCACACTAT CTGCAGGAAG AACAGAAAAC TGAAGCTGTC
  CCATGTGGAA AGGGAATCGG GAATCGTTGT GACATCCCTA GAGATGGAGA TGTCTTAATA
  R
  GCACAGAAAT GTCACCTGGT TGTGGAAAAG AGCCATCTCT GTGATACCCA ACAAAATCAC
  ATTAGGGGCT AGAGCTTAAA GATCCAAACT TGAGAAGAGT AGAGCCAACT GTGAGGTTTC
  ATTAGGGGAC CCAGGAAGAC AGGAGCCAGA TCCAGAAGTT TTCAGGAGCA GAGTGTGAGA
  AGGGGAAGAG AGGCTGAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss144741420	ENSMUSSNP4864858	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs47679858					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:78182831 () rs orientation: forward

Symbol	Name	Function Class
Cpgi455	CpG island 455	1988 bp distal
D1Mit215	DNA segment, Chr 1, Massachusetts Institute of Technology 215	165 bp proximal
Rr413697	regulatory region 413697	1959 bp proximal