rs47680160 SNP Detail

Summary

• ID
  rs47680160
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19117958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGTGTT GCCTTGCTGT
  TCCCGGGTGG TGGCATGTCA AGGAGAGTTC CCCAGAGCGT ACGTTGATGA CAGAGAGCCT
  GTGTCTTACT ACTTCTGTGC CCAATTTTCA GGGTCATGGA GTCCTGGAGA TGCCCTCGGG
  CACTGGGAAG ACAGTGTCCC TATTGGCCCT GATTGTGGCC TATCAGCGGG TGAGTGGCCT
  Y
  CTGAGTGCCT GGAGTGGGGG CTGAGGGGTG GGGCTGGATG GGGCTGAGGT CCCTGTCACC
  CACAGGCTTA TCCGCTGGAG GTGACCAAAC TTATCTACTG CTCACGGACC GTGCCAGAGA
  TTGAGAAGGT GGGCAATGCA GATGGGACCC ATGCTCTGCC CCCTCCCCTG GGCCTTGGTG
  GTCCCCCATC TCTGCCCTCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148474330	ENSMUSSNP4236466	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47680160					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19117958 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18481	CpG island 18481	1373 bp distal
Ercc2	excision repair cross-complementing rodent repair deficiency, complementation group 2	within coordinates
Gm26852	predicted gene, 26852	within coordinates
Rr400148	regulatory region 400148	1944 bp downstream
Rr643124	regulatory region 643124	1983 bp distal
Rr643126	regulatory region 643126	1810 bp proximal
Tssr64844	transcription start site region 64844	1981 bp downstream