rs47680885 SNP Detail

Summary

• ID
  rs47680885
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:90648343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCACTTATT ATAAAATAAA
  GTGAAATAAA ATTCTTTTAT TTTTATAGTG TCTGGCCCAA AGTCTCCCAT TCTGGAGAGT
  TTCTGTGCTT CATTCCTCTT TGAACATCAA CAGTTCTAAC TATATAATTT AAAATAAAAA
  TGGAAATGCT TTTGCTACAA AATTTACATG CCATTTAACT TTTCTAAGTC TTCCAATTAT
  S
  TACAAAATGG ACTTATTGTT ATTATTCCCC AGAGATCACA ATGGTTGCTT GACTCAATGG
  ACCACACTGT CATTAATGAA GAAACACAAG TCACCAGTCA TATCAAGCAC TACTGACACA
  TTTTCAGAGA ACAGTACCTC ACATATTTGC TTCAAAGGGC ACACGCTTAT CTTAAATTGA
  TGTAGTCTGC CTATTGAAGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
ss61669888	NES17615807	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
rs47680885					SNP	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61669888	NES17615807	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:90648343 () rs orientation: forward

Symbol	Name	Function Class
Gm59437	predicted gene, 59437	1401 bp downstream