rs47681638 SNP Detail

Summary

• ID
  rs47681638
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84706512 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCCAGATAT AGTTAAGGTG CCAACTAAGA TTAACCATTA
  GAGAGAATGG CTGGCATTTC TGTGCCATAA ACCTGGTGTC AGACCACTGC TCCAGCTCCT
  Y
  TGCCAGGGTG GAGTTAGGAT TCTCTCTCCA CCAGCACCCT ACAAAGTCAT CATGGTTTTG
  TCCCCATTTG CTCCCGTAGA AAACTGAGAC CCAGAGAGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145368177	ENSMUSSNP599404	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss322746880	CHEV_8_86503782	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47681638					SNP	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84706512 () rs orientation: forward

Symbol	Name	Function Class
Prkaca	protein kinase, cAMP dependent, catalytic, alpha	within coordinates
Rr666366	regulatory region 666366	1760 bp distal
Tssr78320	transcription start site region 78320	1422 bp downstream
Tssr78321	transcription start site region 78321	629 bp upstream