rs47682514 SNP Detail

Summary

• ID
  rs47682514
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:36531458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATCCATCC CTATGTCATT
  AAATACTGTT GTAATGTAGC TTTATTGTTT GAGGACATAT AGCACTCATA CCAGGCATCT
  CAACTCATTT ATTCTTTACA ATAATATTAA TGTATGATAG ATATTATACA TCCAATTTTA
  TGGGTAGGGA AATGGGGTAG AGGCTCATTC TTCTGGGTGT CAAAATTGGA AAAACATGAT
  Y
  CACAGTACAC AGTACAGATA TGATTTATTG ATATGCCAAC TTGTTTTTAC AGTGATCATG
  TCTTTTTACC CTCAACCATG CAGACCCATT TCCTTTTCTT TCTTTTTTTT TTCTTTTCGA
  GAGCTGAGGA ACCCATGACC TTGTGTTTGC TATGCAAACA CTCTACCACT GAGCTACATC
  CCCAACCCCC CAGACCCATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61597408	NES17553393	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47682514					SNP	T	T	T	T	T	T	T	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61597408	NES17553393	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:36531458 () rs orientation: forward

Symbol	Name	Function Class
Crppa	CDP-L-ribitol pyrophosphorylase A	Intron
Rr387069	regulatory region 387069	within coordinates
Rr465183	regulatory region 465183	1966 bp proximal