rs47682763 SNP Detail

Summary

• ID
  rs47682763
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153061452 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CACTGGTAA ATTACAGGGA CCGGACAGTT
  TAAAGACTAG CATGTTACTG ATTGAACGGG TGTGGAGGGG TCCCCTGTTG CCAAAGAAAA
  GAAAGGGAGG GAATTGAAAG AGGAATGGCT TTAGGGCAAG GAAACCTTCA GCTGGCACAA
  M
  CCATTAGCTT CGTGTTTTTA ACTCCCTTGG CTTTATGGGA AAACTGTCAC TTTAGAGCGC
  GACTGTACAG GAGCCCCAGG TAGGGAGGAG ATAGGCTCTT TGCAGATCCT TGACCTGACC
  GAGTGTGGAT CCTCGAGGTG AATTCAGCCA                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60822411	NES16493721	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	A	C	C	C		A	C	A	A		C
ss320071230	CHEV_1_155032836	CHEVERUD	SCREENING_POP	f	SNP								C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47682763					SNP	C	C	C	A	C	C	C	C	A	C	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60822411	NES16493721	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153061452 () rs orientation: forward

Symbol	Name	Function Class
Cpgi864	CpG island 864	64 bp proximal
Lamc2	laminin, gamma 2	within coordinates
Rr13130	regulatory region 13130	1549 bp proximal
Rr28719	regulatory region 28719	within coordinates
Tssr14250	transcription start site region 14250	305 bp downstream
Tssr14251	transcription start site region 14251	365 bp downstream
Tssr14252	transcription start site region 14252	396 bp downstream
Tssr14253	transcription start site region 14253	419 bp downstream
Tssr14254	transcription start site region 14254	436 bp downstream