rs47683028 SNP Detail

Summary

• ID
  rs47683028
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:21693792 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGG ACATGGTGTT GCCTAGCAAC
  Y
  TTCCTTTTCC TGCATACTTT CCTGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145288206	ENSMUSSNP3523761	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss325321886	CHEV_17_21610494	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47683028					SNP	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:21693792 () rs orientation: forward

Symbol	Name	Function Class
Gm52290	predicted gene, 52290	287 bp upstream
Gm56906	predicted gene, 56906	1217 bp upstream
Rr392397	regulatory region 392397	within coordinates
Rr522958	regulatory region 522958	314 bp distal
Rr522959	regulatory region 522959	within coordinates
Rr522960	regulatory region 522960	153 bp proximal
Rr522961	regulatory region 522961	1127 bp proximal
Rr522962	regulatory region 522962	1228 bp proximal
Tssr142877	transcription start site region 142877	313 bp upstream
Tssr142878	transcription start site region 142878	719 bp upstream
Tssr142879	transcription start site region 142879	1377 bp upstream
Tssr146591	transcription start site region 146591	1921 bp upstream