rs47685139 SNP Detail

Summary

• ID
  rs47685139
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:55807494 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCTCTCCA ACTCCTTCTA
  GTTCCCCCCA ATTCCCATTG TCCAACTGCT TCAGCTGCTT GTCTCCTCTC TCTCTCTCTC
  CCTCTCTCTC TCTCTCTCTC TCTCTCTCAT TCTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG CATGTGTGTA AAGCAAACAG GCTAACAAAA AGCAAACAAA CCAGAATAAA
  W
  AGAAGTAACG AAGAGAAAGT ATTTTTAAAA TCTTCTCACA GAAGCCTTCA AAGGCAGCAA
  AATAATATCC ATTATCAAAT GGGAGAACCG AACTCCTGGT TTTGATGACA GGCTTGCTTT
  ATCATATTAA AAGCATTTTA GGATGTTTAG ATCAAGATTC AAAATTAAAT TTTAAATTTG
  GGTTTCCTTT GACTTGCAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61276548	NES16777715	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47685139					SNP	A	A	A	A	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61276548	NES16777715	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:55807494 () rs orientation: forward

Symbol	Name	Function Class
Gm67546	predicted gene, 67546	1495 bp downstream