rs47685263 SNP Detail

Summary

• ID
  rs47685263
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164267332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGTA AATATGTCGG GCTTTTCCTC
  R
  ACAATGCTGT CTTCAAACAG GCTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60337238	NES15839920	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	G	G	A		G	G	A	G		G
ss145978644	ENSMUSSNP6986706	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						G
ss320086028	CHEV_1_166369894	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47685263					SNP	A	A	A	A	A	A	G	G	G	A	A	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60337238	NES15839920	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164267332 () rs orientation: forward

Symbol	Name	Function Class
Atp1b1	ATPase, Na+/K+ transporting, beta 1 polypeptide	within coordinates
Rr13721	regulatory region 13721	1132 bp distal
Rr20253	regulatory region 20253	within coordinates
Rr25446	regulatory region 25446	1343 bp distal
Rr25447	regulatory region 25447	847 bp distal
Rr25448	regulatory region 25448	372 bp distal
Rr31656	regulatory region 31656	269 bp proximal
Tssr9784	transcription start site region 9784	1256 bp downstream
Tssr14733	transcription start site region 14733	1904 bp upstream
Tssr14734	transcription start site region 14734	1859 bp upstream
Tssr14735	transcription start site region 14735	1805 bp upstream
Tssr14736	transcription start site region 14736	1764 bp upstream
Tssr14737	transcription start site region 14737	1704 bp upstream
Tssr14738	transcription start site region 14738	1568 bp upstream
Tssr14739	transcription start site region 14739	1384 bp upstream
Tssr14740	transcription start site region 14740	1343 bp upstream
Tssr14741	transcription start site region 14741	1266 bp upstream
Tssr14742	transcription start site region 14742	1224 bp upstream
Tssr14743	transcription start site region 14743	1795 bp downstream
Tssr14744	transcription start site region 14744	1844 bp downstream