rs47685417 SNP Detail

Summary

• ID
  rs47685417
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58894866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAAACTC ATGAAGGCCT
  GACCCAGGTG AGGGGCAAGC ATCAGGTACC TCCTGAAGGC CTGACCCGGG TTGGGGGCCA
  GCTTCAGGTA CCTCCTGAAG GTCTGACCCA GGTGAGGGGC CAGCCTCAGG TACCTCCTGA
  AGGCCTGGCC CAGGTGAGGG GCCGCCTCAG GTACCTCTTG AAGGCCTGGC CCAGGTGAGG
  G
  GCCAGCCTCA GGTACCTCCT GAAGGCCTGA CCCGGGTAAG GGGCCAGCCT CAGGTACCTC
  CTAAAGGCCT GATCCGGGTA AGGGGCCAGC CTCAGGTACC TCCTGAAGGC CTGACCCAGG
  TGAGGGGCCA GCCTCAGGTA CCTCCTGAAG GCCTGGCCCA GGTGAGGGGC CAGCCTCAGG
  TACCTCTTGA AGGCCTGGCC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss132221423	ENSMUSSNP3724961	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs47685417					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58894866 () rs orientation: forward

Symbol	Name	Function Class
Gm10435	predicted gene 10435	within coordinates
Obscn	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	within coordinates
Tssr101782	transcription start site region 101782	1090 bp downstream
Tssr101783	transcription start site region 101783	1071 bp downstream
Tssr101784	transcription start site region 101784	1059 bp downstream
Tssr108189	transcription start site region 108189	1847 bp upstream
Tssr108190	transcription start site region 108190	1809 bp upstream
Tssr108191	transcription start site region 108191	1674 bp upstream
Tssr108192	transcription start site region 108192	1655 bp upstream
Tssr108193	transcription start site region 108193	1639 bp upstream
Tssr108194	transcription start site region 108194	1591 bp upstream