rs47685649 SNP Detail

Summary

• ID
  rs47685649
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84354129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTTTTCAT GTTCTTTCCT
  GGGAGGAGCT TAGACAAATG GCCAATGACC AGAAGTCAAT GTCGGAAGTC ATAAGACCAC
  ACATGGTCAT AAGACCACAC ATGGCCCACC CAGCAGCACA ATTGGAATTT ACCAACTGGT
  AGACTATTGA CCACATGAGT ACAAGAAAAG ATGGAAACAT CTTAACTTGA GGATCAGGAG
  Y
  AACACAGCAG AGATCTTAAC TGATAAGGGA AGTACCTTTT GATGGTTAAT ATTGATTGTC
  AAGTTGACAG AGTCCAGAAT CACCTAGAAG ACAGACCTCT GGACCAAAAA GGATAGTCTT
  GCTTAAATTT GTTGAAGTGG GACGCCCCAC CTTCAAAGTG GCTGACATCA TCCCCAGGGT
  CCTATATTGC ATAAAAAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss60500622	NES16526895	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs47685649					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60500622	NES16526895	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84354129 () rs orientation: forward

Symbol	Name	Function Class
Gm32073	predicted gene, 32073	1041 bp upstream
Rr518505	regulatory region 518505	1012 bp proximal
Rr518506	regulatory region 518506	1113 bp proximal
Tssr139145	transcription start site region 139145	73 bp downstream