rs47685883 SNP Detail

Summary

• ID
  rs47685883
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153444869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAATCAGGT AGCTTACTTA GTAAGGCCCT GTCTCAAAAA
  ATAAAATGAA GTCGGGCATG GTGGCGCACG CCTTTGATCC CAGCACTTGG GAGGCAGAGG
  Y
  AGTCAGACCA CTGTGTGTTG GAGGAGCCTG GTCTACATAG TGAGCTCCAG GCCAGCCAAG
  ACCACATAGT AAGACCCTGT CTCAAAGAAG AAGAATAAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147998169	ENSMUSSNP2334542	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47685883					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153444869 () rs orientation: forward

Symbol	Name	Function Class
Gm75178	predicted gene, 75178	within coordinates
Rr567697	regulatory region 567697	1757 bp distal
Rr567698	regulatory region 567698	1403 bp distal
Rr567699	regulatory region 567699	787 bp proximal
Rr567700	regulatory region 567700	948 bp proximal
Tssr20902	transcription start site region 20902	1766 bp downstream