rs47686862 SNP Detail

Summary

• ID
  rs47686862
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153622374 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCCAGATA ACTGCCATTA
  ACCTTATGGC ATATTTCCCC AGGTCTTTTT ATTTTTTAAA ATTTATTTGA CATGTGTGAG
  TGTCTTTGTT TTGTTTGTTT TTTCGAGACA GGGTTTCTCT GTGTAGCCCT GGCTGTCCTG
  GAACTCACTT TGTAGATCAG GCTGGCCTCG AACTCAGAAA TCCACCAGCC TCTGCCTCCC
  R
  AATACTGGGA TTAAGGGCAT GCGCCACCAC CACCCAGCTA TGTGTGAGTG TTTTATCGGC
  ATGTATGTCT ATGTATTGTG GGTGTAGTGC CTAAGGAGGT CAGAGGAGAA CATCAGATCC
  TCTAGAACAG TAGTTACAGT CGGTTGTGGG TTGCCATCTT GGCTGCTAGG AATTGAGTGC
  AGCTCCTCTG CGGGAGTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148003980	ENSMUSSNP4352299	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
ss320565077	CHEV_2_153606190	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47686862					SNP	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153622374 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12494	CpG island 12494	1100 bp distal
Efcab8	EF-hand calcium binding domain 8	within coordinates
Gm75501	predicted gene, 75501	721 bp upstream
Rr567738	regulatory region 567738	732 bp distal
Rr567739	regulatory region 567739	631 bp distal
Tssr20916	transcription start site region 20916	1219 bp downstream
Tssr20917	transcription start site region 20917	1203 bp downstream
Tssr20918	transcription start site region 20918	1175 bp downstream