rs47687975 SNP Detail

Summary

• ID
  rs47687975
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45017119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGGTTTCAA GACTCCCGCG TCCGACTCAC TGGAGACCTT
  GCCAGGCCTT GGCCTTCCGA ACCTCTTAAG GGTTGGGGGC AGTGGTCTTT AGTGGTGCTC
  Y
  CTGGCGCTCA CATAGACGCA GCCTTGGGTC GGGCTAGTCT CTGGGACACC GGCCAGCCTC
  CGCCTTCAGA GCTGCGCGAG CGTTGTCTAT CATGGTACAC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss61003689	NES16117379	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs47687975					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61003689	NES16117379	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45017119 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19049	CpG island 19049	within coordinates
Gm45619	predicted gene 45619	482 bp upstream
Gm71276	predicted gene, 71276	within coordinates
Lin7b	lin-7 homolog B, crumbs cell polarity complex component	196 bp downstream
Mtag2	metastasis associated gene 2	within coordinates
Ppfia3	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3	676 bp upstream
Rr400310	regulatory region 400310	451 bp downstream
Rr646419	regulatory region 646419	1678 bp distal
Rr646420	regulatory region 646420	992 bp distal
Rr646421	regulatory region 646421	404 bp distal
Rr646422	regulatory region 646422	within coordinates
Tssr72376	transcription start site region 72376	855 bp upstream