rs47688089 SNP Detail

Summary

• ID
  rs47688089
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28947441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGCCTAAC GTGACCCTGA
  CCGCAGCGGG GCCTGGGTCT GAGGTGCGAG AGGACACACT GGGAGAGGGA CCGTCTCTTA
  CCTTCCCCTC TGCCTCTGAG TCGCTGGAGC TGCTACTGCT GCTGGAGTCG GAGGAGCTGC
  CAGAGACACG CTAGATGGGG GTTGGGGAGG GAGTGGTTAC AGTGAGGACA GGGACCCACT
  Y
  GAGCAGCTTC CAACCCAAAC TGGAAGGCTG ATGTGTGGCC GAGGACCAAG GACGGAAGCC
  AGTTCTCATC TCGGGCCCTC GGGACTCGGT GCCGGTGATG AAGTGACTTA CCCTCGGCTT
  GTGAGCAGCG CCTGCCTCTG GCCCGCCCGG CGCTTTAAGA GGACAGTGTT TGGGGTCTCC
  CACATGGCCT GCCCCCTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60986965	NES16139353	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47688089					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60986965	NES16139353	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28947441 () rs orientation: forward

Symbol	Name	Function Class
2200002D01Rik	RIKEN cDNA 2200002D01 gene	within coordinates
Cpgi18753	CpG island 18753	within coordinates
Gm73451	predicted gene, 73451	within coordinates
Rr644523	regulatory region 644523	391 bp distal
Rr644524	regulatory region 644524	451 bp distal
Rr644525	regulatory region 644525	440 bp proximal
Tssr65618	transcription start site region 65618	346 bp downstream
Tssr71635	transcription start site region 71635	878 bp upstream
Tssr71636	transcription start site region 71636	271 bp upstream
Tssr71637	transcription start site region 71637	77 bp upstream
Tssr71638	transcription start site region 71638	44 bp upstream
Tssr71639	transcription start site region 71639	359 bp downstream
Tssr71640	transcription start site region 71640	441 bp downstream
Tssr71641	transcription start site region 71641	495 bp downstream
Yif1b	Yip1 interacting factor homolog B (S. cerevisiae)	419 bp downstream