rs47688107 SNP Detail

Summary

• ID
  rs47688107
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:82515424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTGCAGGC AAGTACAGGA
  AGTCACCTTT TCAGCCTTAC TGACAGCCAA GAGTCACAGT CGCAATCTGC CTCAAATGTT
  CTTTTTTGCA GTGTTACGAA GTTCTACACC AACTCAGGCT CCACCTCTCT CCAGCTTCCA
  TCCAGAGGCA CACTCTTGAA GGCCTTGCAA TCCTGGCACT CTGCCAAGAA CACACCACAT
  Y
  CCTGCTTTCC GGCCAGGGAA GACAGGACCC AGAAACCAAG GAGTCAGCCC CTCACTCTCA
  CAAGTTTGTA CTCATTTCAG TTGGATTCTA AATCTCTGCA CTCACCAGAC CTCTAGCCTT
  CTGTGCCGGA CCTTGTCCCC AGGACCCCGA GGAAAACCCT TCTCTTTCTC TTTAGAGATG
  GCTTCTTCCT CCTTGATGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61656687	NES17599886	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47688107					SNP	C	C	C	C	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61656687	NES17599886	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:82515424 () rs orientation: forward

Symbol	Name	Function Class
Gm61154	predicted gene, 61154	within coordinates
Rr387523	regulatory region 387523	1572 bp downstream
Rr469294	regulatory region 469294	692 bp distal
Rr469295	regulatory region 469295	546 bp distal
Rr469296	regulatory region 469296	within coordinates
Rr469297	regulatory region 469297	902 bp proximal
Rr469298	regulatory region 469298	1461 bp proximal
Rr469299	regulatory region 469299	1529 bp proximal
Rr469300	regulatory region 469300	1732 bp proximal
Rr469301	regulatory region 469301	1991 bp proximal