rs47688664 SNP Detail

Summary

• ID
  rs47688664
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:61177649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCAGCCAC CAGGAGGCAG
  CACTCCACTG GCGATGCACC CAAAGAGAGC CAAGCAAAAG GCAACAGCCC TGACAACTAT
  CACAGCAACA TCCACAGGCC ACACATGCCA GGCAGACCCT GCCCACAGAT ACACCAGCAA
  GTCCCGGAAA GGCAAACCAC ACAGACAGCC GCATCTGTCA CAGACCTACA GCTGCCACAC
  S
  GATACCACCT CAGTCACACA GGGTTTTCTC CATGATCACC CCACCCCCCT CCGTGGATGT
  AACATTTACA TGCAGCCCAC AAACGCAAGG CAAATGCCAC GAACCCCAAT GGGAACTACG
  CCCCACACCA CCATGACACC GTGTATCATA TATTTCTCCA ACAGCCGTAT GAGCACACGC
  CCTTCCCTAT GACATATGGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52341824	NES15289111	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47688664					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52341824	NES15289111	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:61177649 () rs orientation: forward

Symbol	Name	Function Class
Pald1	phosphatase domain containing, paladin 1	within coordinates
Rr215532	regulatory region 215532	within coordinates
Rr215533	regulatory region 215533	1752 bp proximal
Rr223113	regulatory region 223113	1211 bp distal
Rr228160	regulatory region 228160	within coordinates
Rr228161	regulatory region 228161	1962 bp proximal