rs47688925 SNP Detail

Summary

• ID
  rs47688925
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:40503444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTCAAAGG CTGAAGCTTG
  AGCTGAGGGT GATGAGGAAT TCAAACTTCC CCTCGCATGC ATCCACCCTG TGGTTGCCTG
  GTTTGCTAAG TCCACCTGCT CTGCTGTAGT AGAAGGTTTT GATCTTCTGC AGCTTCATCT
  ACTTCTTAGT GAGTTGCCAA AACTGACCAC TGAAAAGCAT GCTGTGTACA TAACTGTCTC
  R
  TGTCCCAGAA CGTGCAATCA GGAGGAAGTC CTCACTCCCG ATAACGGAAT CCTTGCTCTG
  TGGCTGTGAG GACGTCCCTT AGCAACCTCA GATAGTAATT TTTCTTAGGT TGGATGGAAC
  ATAGTAACGT GCTGGATTCT TTGCTAACTG AAAATAGAAG TATTCGGATT TCAGAAAGAA
  CTGGATAAAT ATTAATGTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60721690	NES16361177	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47688925					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60721690	NES16361177	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:40503444 () rs orientation: forward

Symbol	Name	Function Class
Il1rl1	interleukin 1 receptor-like 1	within coordinates
Il18r1	interleukin 18 receptor 1	1268 bp upstream
Rr16188	regulatory region 16188	1157 bp proximal
Rr29358	regulatory region 29358	1356 bp proximal
Rr371160	regulatory region 371160	969 bp upstream
Tssr6463	transcription start site region 6463	1951 bp downstream
Tssr6464	transcription start site region 6464	1926 bp downstream
Tssr6465	transcription start site region 6465	1357 bp upstream
Tssr6466	transcription start site region 6466	1419 bp upstream
Tssr6467	transcription start site region 6467	1681 bp upstream
Tssr6468	transcription start site region 6468	1692 bp upstream
Tssr6469	transcription start site region 6469	1785 bp upstream
Tssr6470	transcription start site region 6470	1804 bp upstream
Tssr6471	transcription start site region 6471	1896 bp upstream