rs47689248 SNP Detail

Summary

• ID
  rs47689248
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55169720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAAAATCT GGGGACAGGG
  ATGGGAACAG GGTGGCAAAG TGAGAAGGCA AAGGGAAATT GGGGGTGGTA ATGGACAGCA
  AGGAGAAGTC ATGCTCAAAA TGGCTGGGTT TAGCCAACAA AAGGGGATGG CGGCCCAAGA
  GGCTGAAGAG AAGGCCAGTG TTTATTAAGA CAGGTGGTCA GAGACATCTA AGAAGAAGAG
  Y
  GACAGCCAGA GGTCAGATCC TAGGTAGGAA GTCTTGGAAA TGGTGCCCTT GGAAAGGAGA
  CCACAGAACA TTCTTTAATT TGAGGTAGCA CACACACATC AGGGAAATTC CCATCATGCC
  ATCCCACAGA GACAGAATTG CAGATGCTAT TACTACGACC CCCGCCCGGA AAGTGCAAGG
  AACAAAGTTT ACCCAATCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss62402335	NES17240453	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs47689248					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62402335	NES17240453	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55169720 () rs orientation: forward

Symbol	Name	Function Class
Il25	interleukin 25	432 bp upstream
Rr389680	regulatory region 389680	1365 bp downstream
Rr492369	regulatory region 492369	1501 bp distal
Tssr125681	transcription start site region 125681	781 bp upstream