rs47690275 SNP Detail

Summary

• ID
  rs47690275
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:52865575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACCTGCTA TTCCTGCAGG
  CTCACCTCAG TTCCCCTGTT GTTTATCTCT GTCTCAGGGA CTGATTCCCT TCTGTGAAGT
  TCTCTTTCAG ACTGGAAAGC CACCCAGAAT CCACTCCAGC CCCACTGCCC TTCCCTCCCC
  GAGGTCAGAT TGCACTTTTG AGAATATTGT GGGTCATCTT TCTACTGTCT GATACAGGAT
  Y
  AATCCCTGTC TCCGGTTTAC AACGGTCCCT CTCCAATCCC AGCCCATGCC TGTACAAGAA
  CAATGTCAAG TCTGCCCATA ACTTAAGTTT TTAAGGATTC CATCCCACAC TGATCCGTGT
  GTGGATAATT ATCAGCAGGG CCACAGGAAG GCTGTTGTCT TTTTGCCCCA CACCAGGGGC
  TAGCAGGTCC CGGTCTCAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61796103	NES17726111	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T	C	T	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47690275					SNP	T	C	T	T	T	C	T	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61796103	NES17726111	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:52865575 () rs orientation: forward

Symbol	Name	Function Class
Rr479878	regulatory region 479878	304 bp proximal
Rr479879	regulatory region 479879	603 bp proximal