rs47690665 SNP Detail

Summary

• ID
  rs47690665
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135778268 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGAGAGCCC CCTGGGAGGG AGCACACCTT GTTCGAGGAG
  GAGTTGTGGG AGGAAGGAGT CTGGAGAAGG GTCTGGTAAG GCACCTAGGC CCCTTCCTTG
  M
  CCCTGCCTCA TTTTCTCGGG GGCCGGGATC CAGAAGCTAA TGATGTGTCA TGCTGCTAAA
  GCAATAGGGG AGGAACCCAG TTTTCTGCAG ATCTGGCCC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145548375	ENSMUSSNP3777097	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47690665					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135778268 () rs orientation: forward

Symbol	Name	Function Class
Rr12645	regulatory region 12645	133 bp proximal
Tnnt2	troponin T2, cardiac	within coordinates
Tssr227	transcription start site region 227	1085 bp upstream
Tssr9020	transcription start site region 9020	1682 bp downstream
Tssr9021	transcription start site region 9021	1662 bp downstream
Tssr9022	transcription start site region 9022	1174 bp downstream
Tssr9023	transcription start site region 9023	1100 bp downstream
Tssr9024	transcription start site region 9024	1064 bp downstream
Tssr9025	transcription start site region 9025	774 bp downstream
Tssr9026	transcription start site region 9026	576 bp downstream
Tssr9027	transcription start site region 9027	458 bp downstream
Tssr9028	transcription start site region 9028	420 bp downstream
Tssr9029	transcription start site region 9029	147 bp upstream
Tssr9030	transcription start site region 9030	182 bp upstream
Tssr9031	transcription start site region 9031	241 bp upstream
Tssr9032	transcription start site region 9032	824 bp upstream
Tssr9033	transcription start site region 9033	1669 bp upstream
Tssr13894	transcription start site region 13894	1677 bp upstream
Tssr13895	transcription start site region 13895	1633 bp upstream
Tssr13896	transcription start site region 13896	1106 bp upstream
Tssr13897	transcription start site region 13897	1078 bp upstream
Tssr13898	transcription start site region 13898	207 bp downstream
Tssr13899	transcription start site region 13899	275 bp downstream
Tssr13900	transcription start site region 13900	285 bp downstream
Tssr13901	transcription start site region 13901	846 bp downstream
Tssr13902	transcription start site region 13902	1707 bp downstream