rs47690713 SNP Detail

Summary

• ID
  rs47690713
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:85698551 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGGGTGT TTTGGTGTGT
  TTTTAAAGTC TCTCTCTGCC TCCTTCCCCT TGCTGTTCTT GAGCGGGATA TGAAGTTCTT
  GCTTCATTTT GCCGGCCAGT GCGCTCTGGC CTTGTAGACC TGGTAACTTC ACTGGTCAGG
  GCAGCCGCCT GTGCAACCCC AAGTCCCTCT CTCTTTTCCC TGGTTCTCTC CAGTCGGTCC
  S
  GGTAGCTGAT TTCCAGCCTC CTCATCTCCT AGCTTGTTCA CGTTCCAACA CTTGCTGACT
  TCGGGCTAGG GGTGACTAAC TTCTCCCGGC CATCAGCTGA GCAGCCAGGC AGCCACCGGT
  GCTTCCTGGC GCGTCTCTGG GCATGCAGCA CTGCGGTGAC CCCAACAGGG CCGGCTGCGG
  CCTGGGAAGT CCTTGGCTTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60245672	NES15750939	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47690713					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60245672	NES15750939	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:85698551 () rs orientation: forward

Symbol	Name	Function Class
Adamts5	ADAM metallopeptidase with thrombospondin type 1 motif 5	538 bp upstream
Cpgi8391	CpG island 8391	1191 bp distal
Cpgi8392	CpG island 8392	353 bp distal
Gm46558	predicted gene, 46558	within coordinates
Rr325517	regulatory region 325517	within coordinates
Tssr141914	transcription start site region 141914	1411 bp upstream
Tssr141915	transcription start site region 141915	1383 bp upstream
Tssr141916	transcription start site region 141916	1354 bp upstream
Tssr141917	transcription start site region 141917	1030 bp upstream
Tssr141918	transcription start site region 141918	972 bp upstream
Tssr141919	transcription start site region 141919	918 bp upstream
Tssr141920	transcription start site region 141920	592 bp upstream
Tssr141921	transcription start site region 141921	530 bp upstream
Tssr141922	transcription start site region 141922	301 bp upstream
Tssr141923	transcription start site region 141923	129 bp downstream