rs47690880 SNP Detail

Summary

• ID
  rs47690880
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:37298592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TAGAGAACC TCCAACACAC AGCTGGAGGT
  GGTATGAATG GCCTCTGCAG CAGTCACACT AGTATCCACA GGCACAGTGC TCTGTGATCA
  TCCACTAGAA CCCTGCTGCT TGTCTCAGGC GAGCCTCAGG GCAACACCTC GCCCTCACTC
  R
  GACATCAGCT CCATCCCTTC CTGTACTTGG ATACTGTCCT TGGCAATGCC AGCTTCAGCA
  AGAAGCTGAG GGAGATAGAG GCCATGATCG CAGTCCAAGA GGAAAAGATC TTCAGACTCA
  GAAGAATCAT AAAATGATGA GGAGTCTCTA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148937646	ENSMUSSNP331875	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
ss319691072	CHEV_1_37316356	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47690880					SNP	A	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:37298592 () rs orientation: forward

Symbol	Name	Function Class
Cnga3	cyclic nucleotide gated channel alpha 3	within coordinates
Cpgi160	CpG island 160	1767 bp proximal
Gm69908	predicted gene, 69908	846 bp downstream
Rr409496	regulatory region 409496	857 bp distal