rs47691836 SNP Detail

Summary

• ID
  rs47691836
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:107265808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTCCGGAG GAAAGCTCCA
  GCGCGGTCCT CTCTGTAGTG GTCTGCAGCC CAGGATTTTG TTTGCAAGTT GCTGGTGCCA
  GTTCTTTGGG GCATAGGTAT CTGTGTGGCG TGTGAGTGAG GGCTGAATGG ACCCTGGGGG
  CTGGATGGCA CTGTACTGTC CTCAGAGCTC CAGTGTCCTT CGCATTTAAG ATGGGTTCAC
  R
  CTCATTTCAC ACTGAGGGAG TCTAGGCTGA ATCTGTTTGT TTGAGAGGGA GGAAGGGCAA
  GAGCACCTGA CAGATAAGAG GCTTGACATT GTAACTGTAG AAGGAAGGAC AGGAAGTGTC
  CCGCTTGGAA GGGACACACA CATCTTCACT GTCCAGCTCC CAGGCACTGG GGTGGCTGGC
  TGGCTTTTTG TATGTATTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61046441	NES16082604	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A		G	G	A	G		A
ss322380447	CHEV_7_114810115	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47691836					SNP	A	A	A	A	A	A	G	A	A	A	A	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61046441	NES16082604	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:107265808 () rs orientation: forward

Symbol	Name	Function Class
Ppfibp2	PTPRF interacting protein, binding protein 2 (liprin beta 2)	within coordinates
Rr166477	regulatory region 166477	within coordinates
Rr400538	regulatory region 400538	1930 bp downstream
Tssr2361	transcription start site region 2361	1220 bp downstream
Tssr68430	transcription start site region 68430	1908 bp downstream
Tssr68431	transcription start site region 68431	1820 bp downstream
Tssr68432	transcription start site region 68432	1807 bp downstream
Tssr68433	transcription start site region 68433	1674 bp downstream
Tssr68434	transcription start site region 68434	1609 bp downstream
Tssr68435	transcription start site region 68435	1586 bp downstream
Tssr68436	transcription start site region 68436	995 bp downstream
Tssr68437	transcription start site region 68437	881 bp downstream
Tssr68438	transcription start site region 68438	731 bp downstream
Tssr68439	transcription start site region 68439	397 bp downstream