rs47691964 SNP Detail

Summary

• ID
  rs47691964
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:127222856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGCA TTCCCCAGCC CCCTGACACA
  C
  ACATACTCTT ACCTTGCCTC TCTCT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147413910	ENSMUSSNP1644958	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47691964					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:127222856 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14848	CpG island 14848	1133 bp proximal
Gjb3	gap junction protein, beta 3	within coordinates
Gm40251	predicted gene, 40251	300 bp upstream
Rr599858	regulatory region 599858	1301 bp distal
Rr599859	regulatory region 599859	within coordinates
Rr599860	regulatory region 599860	88 bp proximal
Rr599861	regulatory region 599861	654 bp proximal
Rr599862	regulatory region 599862	1155 bp proximal
Rr599863	regulatory region 599863	1771 bp proximal
Tssr43418	transcription start site region 43418	35 bp downstream
Tssr43419	transcription start site region 43419	1484 bp downstream
Tssr43420	transcription start site region 43420	1712 bp downstream
Tssr43421	transcription start site region 43421	1736 bp downstream