rs47692272 SNP Detail

Summary

• ID
  rs47692272
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134422331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGTA CAGCGAGAGG CACGGGCGGG
  A
  CGCCCCCAGG GACCTGCGCC AGCGT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss145506438	ENSMUSSNP538387	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss319982685	CHEV_1_136391170	CHEVERUD	SCREENING_POP	f	SNP		A	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs47692272					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134422331 () rs orientation: forward

Symbol	Name	Function Class
Cpgi770	CpG island 770	within coordinates
Rabif	RAB interacting factor	46 bp upstream
Rr396314	regulatory region 396314	within coordinates
Rr418927	regulatory region 418927	842 bp distal
Rr418928	regulatory region 418928	within coordinates
Rr418929	regulatory region 418929	137 bp proximal
Rr418930	regulatory region 418930	578 bp proximal
Tssr8899	transcription start site region 8899	35 bp upstream
Tssr8900	transcription start site region 8900	143 bp upstream
Tssr8901	transcription start site region 8901	393 bp upstream