rs47692862 SNP Detail

Summary

• ID
  rs47692862
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:76497927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGGAGCAA GAATGAACCC
  AGGCAAATAC ATAACTAAAG GGCTCAATGT GGGATAGGAC TTGCCTCTTA CCAAGTCTGA
  ACGAGAGCTT TCATGGGTCT GTTTGGACTG TCGGAGATTG CTTGGTGCCA GCTGCAGAGA
  TATTCCATGG CTGTGCCCAC CATGGCTACA AGGCCCATCT TTCTCAGAAT CCTGTGGAAA
  R
  ACTGGTCAGA GCCTGTGAAG ACCTTACCCA TCCCACCTAG TGGTTCCCCA GAGCCTGACC
  TGGTCCCTGG GCAACAAGAG GTTGAAGAAG CTCTCAAACA GGAAGAAGAT GTAGAAGCCT
  CCAAGTACAG CCAGCAGGCG CCAGGTGGCC TGCCCACCAA CGCCCACCTC CTCCTCATGG
  GTGTGACCCT CTCCACCATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss63562838	NES17021996	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs47692862					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63562838	NES17021996	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76497927 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7242	CpG island 7242	284 bp distal
Gm62519	predicted gene, 62519	within coordinates
Rr311946	regulatory region 311946	526 bp distal
Slc39a4	solute carrier family 39 (zinc transporter), member 4	within coordinates
Tssr135019	transcription start site region 135019	1012 bp upstream
Tssr135020	transcription start site region 135020	765 bp upstream
Tssr135021	transcription start site region 135021	755 bp upstream
Tssr135022	transcription start site region 135022	490 bp downstream
Tssr135023	transcription start site region 135023	630 bp downstream
Tssr135024	transcription start site region 135024	1314 bp downstream