rs47693976 SNP Detail

Summary

• ID
  rs47693976
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:33858832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATAAAAAAC TTCATAGGTA
  ATGGGAGACA AAGAGAGTAG AAAATGTTGG TGACTGTGGG CAACTGGGAA GAGAAAACTG
  ATTTAAAATG GGGTTATCTC CGAGGTCACC CTTAAGGAGC ATTATCATAA AGACACAGAG
  GAGGAAGAGG AGAGACCCAT GCATTGAGTG GTATGCATTA CAGACAGGAC AGAGGCGGGG
  K
  GGGGGGACCA CTGCTGAGTC ATTCAGGGAC TGTTTGCTTT CCTCAGAGAT GAACTCGCTG
  AGAGATTGGG AGCAGACACT TTATAGGCCT CCTCTAGGGC AGCAGACCAC GGAGGAGGAG
  CCCATTACAG TGATCTGGAC TGTGGAGGGC AGTTCCTCTA CTTGGGGTGA CAGTGAGAAG
  TAGTTGAATT CCGGATGTAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss145493394	ENSMUSSNP6946487	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
ss325366953	CHEV_17_33776803	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs47693976					SNP	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:33858832 () rs orientation: forward

Symbol	Name	Function Class
Gm20507	predicted gene 20507	within coordinates
Pram1	PML-RAR alpha-regulated adaptor molecule 1	within coordinates
Rr392542	regulatory region 392542	within coordinates
Rr525901	regulatory region 525901	within coordinates
Tssr143787	transcription start site region 143787	1748 bp downstream
Tssr143788	transcription start site region 143788	1735 bp downstream
Tssr143789	transcription start site region 143789	1717 bp downstream
Tssr143790	transcription start site region 143790	1341 bp upstream
Tssr147440	transcription start site region 147440	53 bp downstream