rs47694227 SNP Detail

Summary

• ID
  rs47694227
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31343499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCAAAAA AAATCACACT
  GAACCATCAT TTCTAGTGCA GTGGTTAAGG AACCAAGGTC TCTCCCAGGA GGAAGAAACC
  AGGAAACCCC AGCACAATGA GAAGCAATGT TTCCTGGCCC CTGTGTTGTG TAAATGAGCC
  ATAGAGTAGC CTGGATGATG TGGCCCTGAG ATGGTCCCCT GTGGGAGTAG ACCTAGGGAT
  Y
  AGCCATGCAG CACAGGAAGG TGCCTCCACC CCCAAACCTT CCCATGGTGA GTGCAGAGAA
  AAGCCACACT GGAAATGAGG AAAAGGGGAC CAATCAGCCT AGAGAATGTG GACATGGGTA
  AGGATGTGAT ATATAGACTG CTGTGCTGTA TCCATCAAAA AAAAAAAAGC CTTGTGCAGT
  GTGGCAGATA TTAAATATGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60562267	NES16490755	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47694227					SNP	T	T	T	T	T	T	T	T	T	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60562267	NES16490755	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31343499 () rs orientation: forward

Symbol	Name	Function Class
Rr330604	regulatory region 330604	1899 bp distal
Rr334775	regulatory region 334775	702 bp proximal
Tff3	trefoil factor 3, intestinal	781 bp downstream