rs47694485 SNP Detail

Summary

• ID
  rs47694485
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172035240 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCACTCAG CCGGGCTGAA
  AGAGGGAGGA GGGAGGAGGG AGAATTGGAG AAGCATCCGA TTTTCACCCT ACCTCCATGA
  GGGGCGTCAG CTCAGCTCTG CAAGTGCCTG ACCCTGAGAA CGGCTTCAAT GTTTGCACAC
  CACCAGGAAC ACCCCATTTT GCCTTCAGGT CCAGCTGATC AGAGACCCTT CCAGAAGCCT
  R
  AGATGAGCCC CTTCTTCTGG GAGGAGCAGG TCCTGGTCCT GTGCCTTAGG TTTCATATAT
  AGTTCTTCTC TTTGCTCCTC TTACCCCCAG CCCCACCCCC ACCCCCCACA TGGCTGCCCA
  TTGCTCCTTT GAGGGTAACT AATATACCCT CAGAAGTTGC TTTTGTTTCT GAGTCGCTGT
  AGGGTCGGAA TCTATCATGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss120007367	PARCsnp_1.17762	PARC_SEQ	INBRED	f	SNP		A	G
ss120010268	PARCsnp_1.07401	PARC_SEQ	INBRED	f	SNP		A	G
ss146183866	ENSMUSSNP6853511	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs47694485					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172035240 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1038	CpG island 1038	720 bp distal
Gm17224	predicted gene 17224	within coordinates
Pea15a	proliferation and apoptosis adaptor protein 15A	942 bp upstream
Rr396578	regulatory region 396578	133 bp downstream
Rr423485	regulatory region 423485	880 bp distal
Rr423486	regulatory region 423486	379 bp distal
Tssr294	transcription start site region 294	1040 bp upstream
Tssr295	transcription start site region 295	990 bp upstream
Tssr296	transcription start site region 296	914 bp upstream
Tssr297	transcription start site region 297	880 bp upstream
Tssr15164	transcription start site region 15164	1008 bp upstream
Tssr15165	transcription start site region 15165	918 bp upstream
Tssr15166	transcription start site region 15166	887 bp upstream
Tssr15167	transcription start site region 15167	28 bp downstream