rs47694589 SNP Detail

Summary

• ID
  rs47694589
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:10377036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACCCTCCT CGCTGCATCT
  CCTGAGTGTC AGGGTTATGG GGCCATGGAC GCCTCACCTT CTGAAATTGT GATGTGGTCA
  TGAAGTTATG AACGTGGTTC ACTTTATCCA CTTTCTTTAG CTTGGCTGAC TGTGCACTAC
  TGACCAAGTT TTTTTGACCA AAGTGAGAAA AACATGCTAT CTTTCAGAAA CTTTTACTTT
  W
  AAAAAAAAAA AATTCCACAA ACCATGGTAC AAGTTTAGAT CAGTGGATAG CTTCCAGCTG
  TCAGGTTTTC CCTTCTACCT TGTGAACCCC AGGGATCAAC CTCAGGTTGT CAGACTTGAA
  GAAGAGCACC TTTACTCACT GACTCATCTG TGTGGCCTCC TCCTTTCTGT CCGATTCCAA
  TTCTACAACT TGATCTGAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss134581202	ENSMUSSNP840288	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
ss320653420	CHEV_3_10311976	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47694589					SNP	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:10377036 () rs orientation: forward

Symbol	Name	Function Class
Impa1	inositol (myo)-1(or 4)-monophosphatase 1	within coordinates