rs47695009 SNP Detail

Summary

• ID
  rs47695009
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70912256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGATAACTA AATAACCACA TCGCCCTACT TAGATGACTT
  TGTCATTGTG TTAGAGTAGT GAGGAATGAA TTAGTCTCAT AACCAAGGTG AGTGAAGACA
  Y
  GGACACAGAA TACACGTTCC ACTTAAATTT TGTAGTCTTG AGTAGCTGTT CTCTTATAAC
  ACAGTGTCTA AAAGGTGGTT CTTGTGTGTA GGTGGTCAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132379960	ENSMUSSNP7125129	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss323738916	CHEV_11_70834932	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47695009					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70912256 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3205	CpG island 3205	1324 bp distal
Derl2	Der1-like domain family, member 2	1589 bp upstream
Mis12	MIS12 kinetochore complex component	within coordinates
Rr369277	regulatory region 369277	1464 bp downstream
Rr402697	regulatory region 402697	1924 bp downstream
Rr450471	regulatory region 450471	1809 bp distal
Rr450472	regulatory region 450472	1600 bp distal
Rr450473	regulatory region 450473	1159 bp distal
Tssr102806	transcription start site region 102806	1851 bp downstream
Tssr102807	transcription start site region 102807	1813 bp downstream
Tssr102808	transcription start site region 102808	1792 bp downstream
Tssr102809	transcription start site region 102809	1777 bp downstream
Tssr102810	transcription start site region 102810	1542 bp downstream
Tssr102811	transcription start site region 102811	1492 bp downstream