rs47695436 SNP Detail

Summary

• ID
  rs47695436
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19240415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTT TCTTTCAAAA AGCAAATCTT
  S
  CTGGGCAGTG ATGGCGCACA CCTTT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134665685	ENSMUSSNP296364	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	C
ss320678125	CHEV_3_19086251	CHEVERUD	SCREENING_POP	f	SNP				C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47695436					SNP	G	G	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19240415 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13001	CpG island 13001	1504 bp proximal
Mtfr1	mitochondrial fission regulator 1	1076 bp upstream
Rr397614	regulatory region 397614	1735 bp upstream
Rr573951	regulatory region 573951	588 bp proximal
Rr573952	regulatory region 573952	1369 bp proximal
Rr573953	regulatory region 573953	1870 bp proximal
Tssr28500	transcription start site region 28500	1051 bp upstream
Tssr28501	transcription start site region 28501	1070 bp upstream
Tssr28502	transcription start site region 28502	1108 bp upstream
Tssr28503	transcription start site region 28503	1115 bp upstream
Tssr28504	transcription start site region 28504	1834 bp upstream
Tssr28505	transcription start site region 28505	1848 bp upstream
Tssr28506	transcription start site region 28506	1861 bp upstream
Tssr28507	transcription start site region 28507	1963 bp upstream
Tssr28508	transcription start site region 28508	1975 bp upstream