rs47696374 SNP Detail

Summary

• ID
  rs47696374
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:57910312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATCA AGTCTGTGTT ATTCCATTGC
  Y
  TGAATACTGG TTCCCAGAAC TGGCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss144931891	ENSMUSSNP1912352	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss322670117	CHEV_8_59936075	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47696374					SNP	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:57910312 () rs orientation: forward

Symbol	Name	Function Class
Rr663749	regulatory region 663749	within coordinates
Scrg1	scrapie responsive gene 1	within coordinates
Tssr77422	transcription start site region 77422	1374 bp downstream
Tssr77423	transcription start site region 77423	1281 bp downstream
Tssr77424	transcription start site region 77424	1260 bp downstream
Tssr77425	transcription start site region 77425	1242 bp downstream
Tssr77426	transcription start site region 77426	1194 bp downstream